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Chore/SOF-6990-1: update ModelFactory and MethodFactory #30

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This PR concerns a refactoring effort regarding the method data.

Method data for the Pseudopotential has the following dependencies:

  • Elements (via Material)
  • DFT functional (via Model)
  • Application name (via Application)
  • Method type (via Method)

The goal of this effort is to include the dependencies in ModelFactory and MethodFactory so that we avoid creating method instances that have no method data.

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